Browse
Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.393EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.381EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
C.32EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AE.8EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.516EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.526EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.279EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AE.7EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
N.6EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.36EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
A.23EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.596.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.473EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.595.2EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
BA.2.76.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
BA.2.38.4EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
BA.2.38.3EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
BM.4EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
B.1.1.357EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
BP.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
B.1.177.46EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.348EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.428.2EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AJ.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.459EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.160.29EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.415.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.243.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.98EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.566EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.480EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.579EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
XAYEWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
DJ.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
XAEEWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
B.1.467EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.484EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.476EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
A.19EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
A.18EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.404EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
CV.2EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
DJ.1.3EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
N.10EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
P.1.11 (Gamma)EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.435EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.445EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.124EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.384EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
XAQEWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used