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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBB.1.5.26NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GN.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FW.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.1.2.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBLNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EK.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.466.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.10.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GS.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HG.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.323NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FU.1.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FN.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.74NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.53NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JB.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.3.11NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JC.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.564NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.461NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.486NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.603NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.70NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.606NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.601NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.86NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.543NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.139NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
C.31NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.221NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.362NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.265NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.585NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.351NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.36.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.36.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.243NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
R.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.216NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.471NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
C.16NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.420NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
L.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.36NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.518NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.551NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
C.17NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.207NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used