Browse
Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
AY.103 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.3 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.18.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.5.1.16NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LE.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDQNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.502NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.285NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.582NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.580NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.306NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.280NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.329NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
ME.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LE.1.3.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDR.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.49.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.5.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HV.1.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.16.11NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.15.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GK.1.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JD.1.1.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.25NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BN.1.2.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.16.26NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GJ.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CM.12NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DY.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.7.14.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.3.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DY.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.59NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.24.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.17.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.63NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.2.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GW.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.2.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.7.14.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.13.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.18NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.16NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.22NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HL.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.42.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used