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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BF.7.4.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BN.1.3.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BL.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.47NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
ED.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BE.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.1.24NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.1.16NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.26NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.22NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.21NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.22NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.10NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.38NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.3.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.3.13NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.3.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.10.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.56NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.29NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.10NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.51NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.3.18NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XATNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.24NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.12NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BM.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.28NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.62NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.24NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.13.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.28NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BE.1.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XAZNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.4.6.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBJNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EJ.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DQ.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.31.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-17028.5South Korea
BQ.1.1.77NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XAY.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BY.1.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.618NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.458NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.17NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used