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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBB.2.3.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.9.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FE.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.16.13NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FR.1.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.3.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.44NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FU.3.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FV.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GJ.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.16.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-4273.88South Korea
XBB.1.22.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FE.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBL.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.56NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GR.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.16.21NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.568NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
P.1.13 (Gamma)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.372NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.634NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
C.37.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.630NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.360NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.578NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.544NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.448NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.425NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.354NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.503NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.36.31NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.623NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.214.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.588NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.210NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
A.28NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.567NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
C.23NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
C.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.541NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.36.24NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.25NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.189NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.563NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.36.34NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.2.3.12NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.23.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.21.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.5.1.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used