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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBB.1.5.104NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HH.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.1.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GA.4.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GW.5.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JE.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.5.2.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.11NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DV.7.1.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.16.23NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GN.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JH.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GJ.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GJ.1.2.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HN.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.10.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.41.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GW.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JG.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GJ.1.2.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.33.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.4.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JJ.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GK.3.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FR.1.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.10NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.12NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.33NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GK.5.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XCZNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.40NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GK.1.6.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GY.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XCWNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GA.2.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GJ.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GK.1.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.4.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.103NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HC.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FE.1.1.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.94NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GK.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.15.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GJ.5.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.21NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.70NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GJ.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used