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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BA.2.32NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.1.1.13NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDTNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.21NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.2.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.617.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.109 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.4.2.2 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.4.2.3 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.4.8 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.617.1 (Kappa)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.4.3 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GS.7.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XWNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.1.10NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KG.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDJNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.3.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GK.1.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.5.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.36.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.86.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.3.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LV.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.23NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GE.1.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.2.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JC.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KE.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.8.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
C.30NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.56NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JD.1.1.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FW.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JS.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GK.2.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HG.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GE.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XCQNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GS.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.11NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JC.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GK.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.41.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GK.3.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.2.3.21NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.36NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.108NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JS.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used