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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BA.5.2.23NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BL.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BE.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.9.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.6.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.34NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.7.11NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CE.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EA.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.22NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DH.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XGNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.3.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EF.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XPNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DN.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BE.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.1.1.15NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.7.16NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.3.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CQ.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EC.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.52NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.23.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XNNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.111 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BM.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.1.31NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.30NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CG.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.16NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.20NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CH.1.1.30NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.234NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Z.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
V.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.36.22NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.282NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.131NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.274NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
A.25NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.235NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.65NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.45NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.50NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.60NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used