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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.160.26NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-211.894South Korea
AY.39.1.2 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.4.15 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.75.10NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
C.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.82 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
A.30NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.36.35NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.23.1 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.466.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.213NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.56 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.39.1.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.91.1 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XMNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.1.1.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.70NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.63NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.4.1.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.8.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EC.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BM.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XLNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BD.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.87 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BE.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.11.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBF.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BZ.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.10.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.7.24NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.10NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.44NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BE.1.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.7.4.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.5.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.37NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.57NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CN.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.4.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.54NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.18NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.52NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BL.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.11.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.48NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JQ.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.10.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BL.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-17028.5South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used