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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.36.33NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.405NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.296NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.412NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AC.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
C.27NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.421NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.364NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.82NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.61NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.70NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.43NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.559NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.14NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.406NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.69NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
A.26NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
ER.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CH.1.1.23NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.640NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.1.1.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.311NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.93NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.104NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.258.10NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.225NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
A.2.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AV.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-14372.8South Korea
B.1.1.309NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.105NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.610NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.10 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.286NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.36.17NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.369NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.69NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.26NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.87NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.39.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.12NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GA.4.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-18487.6South Korea
HK.3.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.73 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.60 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.124.1 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GS.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.13.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-21208.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used