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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBB.1.21NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EJ.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BM.1.1.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.132 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.160.17NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.4.1.10NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.19NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KF.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CS.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.83NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BJ.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDGNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GA.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DV.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.11NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.53NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.4.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EU.1.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CM.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.43NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HU.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JB.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.55NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CM.5.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CM.8.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBSNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BN.1.2.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XAHNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBJ.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EP.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.4.1.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FF.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DN.1.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.626NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.629NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GA.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.61 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.75.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GC.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.16NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.524NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.38NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.1.15.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.15NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.59 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBRNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DJ.1.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CH.1.1.21NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used