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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.631NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.627NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.519NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.514NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GT.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.87NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XAPNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BE.1.4.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.2.6.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.47.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBF.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CF.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CM.11NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DN.3.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DJ.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBC.1.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CM.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BW.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.10.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.40NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.160.25NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.74NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BN.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.2.6.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.238NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.11NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.68NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.7.26NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.2.12NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.39.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EK.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.233NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.24NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-17028.5South Korea
B.1.1.320NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
C.33NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.635NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
C.21NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
C.14NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EP.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.15.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XCBNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.15.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CM.8.1.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-17723.5South Korea
XSNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.4.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.29NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.38NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used