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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.365NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.252NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.223NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.640.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.115NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.127.1 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.88NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AP.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AK.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.98.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.1.13.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.34.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.124.1.1 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.203NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.8.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.209NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.236NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.33NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XQNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.59NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.395NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.120.2.1 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.416.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.532NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.408NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XHNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.19 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
N.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AM.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.15 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.113NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GA.10NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.5.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.423NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.550NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.261NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.3.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BR.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.25NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.51NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FT.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.2.11.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EE.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.52NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBF.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BN.1.4.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DS.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.32NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.58NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used