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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
DN.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.10NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.28NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CJ.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBF.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.15NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.31NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GA.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.12NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.377NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.5.3 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BB.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.86 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.4.7 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.4.12 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.7.2 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.1.1.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.390NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
N.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.317NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.397NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.277NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.294NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.81NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HV.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.2.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KK.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.3.17NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FG.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GN.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.1.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.413NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.5.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JD.1.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.268NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.409NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FG.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KV.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GK.1.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.31NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.587NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.232NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.60NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CD.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CM.4.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.1.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DE.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.333NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used