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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
CM.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.1.27NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.16NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.5.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.59NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.15NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.56NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.2.13NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDP.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HN.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KL.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.24.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GK.2.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.1.5.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HE.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JM.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EH.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.3.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DF.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CK.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.27NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.16NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CM.10NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.2.11NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.25NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-20458.7South Korea
DV.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CH.1.1.10NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CH.1.1.26NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DV.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CH.1.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CH.1.1.11NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FJ.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BN.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DV.3.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.14NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.80NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GG.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.3.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CK.1.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.34NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GD.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.37.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.77NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FD.4.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.51NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.16.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.52NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CH.1.1.27NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used