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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.631EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.627EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.519EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.514EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
GT.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBB.1.5.87EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XAPEWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BE.1.4.3EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBB.2.6.3EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBB.1.47.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBF.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
CF.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
CM.11EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
DN.3.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
DJ.1.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBC.1.5EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
CM.6EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BW.1.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BF.10.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BR.1.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BQ.1.1.25EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BQ.1.1.51EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FT.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBB.2.11.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
EE.5EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BQ.1.1.52EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBF.9EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BN.1.4.5EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
DS.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBB.2.12EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BF.39.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
EK.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.233EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBB.1.24EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.320EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
C.33EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.635EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
C.21EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
C.14EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.19 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
EP.1.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BQ.1.15.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XCBEWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBB.5EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BQ.1.15.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
CM.8.1.5EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XSEWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FL.4.7EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBB.1.5.29EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.38EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used