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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
AY.4.4 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.4.9 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-1935.15South Korea
B.1.398EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.94 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
HK.18EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.177.18EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.50EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.60EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.52EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
W.3EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.250EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.177.63EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.27EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.23EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.130EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.44EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.469EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.315EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.204EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.177.50EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.170EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.232EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.177.84EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.76EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.301EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.36.7EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.269EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.234EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.165EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.258.12EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
V.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.149EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.413EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.258.4EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.9.5EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.107EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.10EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.177.9EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.4.10 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.47EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.36.16EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.41 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.71EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AS.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.142EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.166EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.4.11 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.4EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.34.2 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
Z.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used