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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
FL.40EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
GK.1.6.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
GY.8EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XCWEWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
GA.2.1.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FW.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
JS.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
GK.2.1.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
HG.3EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
GE.1.3EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XCQEWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
GS.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
EG.11EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
JC.3EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
GK.4EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBB.1.41.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.119.1 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.25.2 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.122.6 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.621.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.39.2 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.125 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.103.1 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.92 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.122.4 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.101 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BA.1.5EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BA.1.14EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BA.2.57EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BA.2.49EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BE.3EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BA.4.8EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BA.2.9.6EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BA.2.13EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BA.2.69EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BA.2.60EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BA.2.9.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
P.1.14 (Gamma)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
P.1.7.1 (Gamma)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
P.1.2 (Gamma)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.112 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
P.1.10 (Gamma)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
A.2.5EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.102 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.124 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.46.6 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.43.3 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BA.5.1.33EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
CP.5EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BA.2.45EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used