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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBB.1.16.13EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FR.1.4EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
GY.2.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBC.1.6EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FL.1.4EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FY.4.1.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
HH.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
GY.7EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FY.5.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
HH.1.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBB.1.5.85EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FU.5EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FY.3.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBB.1.5.62EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
GW.1.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FL.1.3EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FY.3EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
EG.5.1.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FY.3.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FL.12EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FR.1.3EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBB.1.16.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FL.4.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FR.1.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.544EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.448EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.425EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.354EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.503EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.36.31EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.623EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.214.3EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.588EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.210EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
A.28EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.567EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
C.23EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
C.2.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.541EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.36.24EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.25EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.189EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.563EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.36.34EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.258EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
GR.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
EG.1.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBB.1.16.21EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.568EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
P.1.13 (Gamma)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used