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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBB.2.3.20NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
EG.5.2.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
HK.27NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
HK.30NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
HK.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
EG.5.1.17NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
DV.6.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FK.1.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
GY.2.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBC.1.6NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FL.1.4NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FY.4.1.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
HH.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
GY.7NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FY.5.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
HH.1.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.1.5.85NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FU.5NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FY.3.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.1.5.62NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
GW.1.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FL.1.3NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FY.3NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
EG.5.1.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FY.3.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FL.12NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FR.1.3NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.1.16.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FL.4.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FR.1.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FU.2.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.1.16.10NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBL.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.1.24.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FY.1.4NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.2.3.5NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.1.9.5NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FE.1.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.1.16.13NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FR.1.4NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FY.5NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FY.1.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.2.3.3NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FE.1.1.3NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FY.6NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
EG.1.6NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FL.1.1.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.1.16.30NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
HH.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
HK.29NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used