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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBB.1.9.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FL.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FY.1.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XDBNCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
GA.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.1.5.35NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
GM.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
A.28NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-18735.2Germany
B.1.567NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
C.23NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
C.2.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.541NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.36.24NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.25NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.189NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.563NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.36.34NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.2.3.12NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FL.23.2.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FL.21.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
EG.5.1.4NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
EG.5.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
HK.28NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.1.9NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.1.42NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FL.4.10NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
HK.19NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FL.3.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.1.5.44NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FU.3.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FV.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
GJ.1.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.1.16.7NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-2529.93Germany
XBB.1.22.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FE.1.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBL.3NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.1.5.56NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.1.16.3NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
EG.1.8NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.1.5.49NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBL.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FR.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FL.17NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.2.3NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FL.18.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FL.15NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
EG.14NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FL.14NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.544NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.448NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used