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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BA.2.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.443NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.595.4NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.495NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.294NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.453NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.44NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.350NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.304NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.315NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.198NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.366NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.441NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.416NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.63NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.263NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.135NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FK.1.4.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.13NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
DR.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.160.15NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.219NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
N.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.208NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.125.1 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.78 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.159NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.43.5 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBC.1.6.4NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FP.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.2.2.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.177NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.301NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.308NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.210NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.325NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.590NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.116NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.496NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.438.4NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.49 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BF.38.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BF.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BT.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.5.2.55NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.2.76NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.5.1.30NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BE.11NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.5.2.9NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BF.31NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used