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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.446NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.76 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.398NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.163NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
P.3 (Theta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.2.38.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XAVNCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BE.1.4.4NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBC.1.3NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BM.4.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BF.20NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.2.77NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
CP.1.3NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FC.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BY.1.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AZ.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.97NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.36.18NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.177.32NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.59NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.177.67NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.277NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-748.712Germany
AY.28 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.272NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.371NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AA.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
C.8NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.425NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.144NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.288NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.249NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.378NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.97NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.9NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.439NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.408NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.256NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.128NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.36.33NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.405NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.296NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.412NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AC.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
C.27NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.421NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.364NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.82NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.177.61NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FQ.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
JB.1.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used