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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
AM.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.15 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.113SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GA.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.5.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.423SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.550SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.261SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.3.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BR.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.25SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.51SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FT.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.11.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-2756.79South Korea
EE.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.52SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBF.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.4.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DS.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.10.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XAY.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CY.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.3.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBTSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.33SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.29SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.1.28SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CL.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HH.8.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.19SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FM.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FK.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.7.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.8.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EU.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.14SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.21SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EJ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BM.1.1.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.132 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.17SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.4.1.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.19SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KF.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CS.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.83SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BJ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDGSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GA.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used