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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
AY.51 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.122.5 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.40.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.28SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GK.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.13.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.54SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.196SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.57SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.34SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.459SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.117SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.381SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.237SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.382SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.395SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
A.28SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.567SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.23SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.541SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.24SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.25SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.189SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.563SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.34SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.258SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.3.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.23.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.21.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.5.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.5.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.28SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.42SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.4.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.19SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HF.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.31SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HG.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.4.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.9.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDBSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GA.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.35SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GM.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.16.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used