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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.338SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BG.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.20.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XVSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.38.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.4.1.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.80SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.258.24SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.71SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.445SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.21 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.20SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.19SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AT.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.428SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.374SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.63 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.377SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.258.15SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.298SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.30.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.76SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.258.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
XBC.1.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.258.14SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.17.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.23SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.562SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.219SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
N.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-3577.39South Korea
XASWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18758.6South Korea
AZ.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.114SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.39SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.619.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
P.1.12.1 (Gamma)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.22SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AZ.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.260SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.456SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.16SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.4.16 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.1.22SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
B.1.177.70SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.42SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.134SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used