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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBFSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.11.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBF.7.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-1215.87South Korea
B.1.1.367SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GK.1.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.3.13SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.385SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.45SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.244SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JD.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EP.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.17.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CM.7.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.493SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.351.2 (Beta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.640.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.352SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.251SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HC.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XCJSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FT.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FZ.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.497SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.355SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GA.7.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.403SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
A.27SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.30SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GW.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.40SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.2.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.199SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.112SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.123SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.143SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.29SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.48SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.46.6.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.112.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.360SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.49SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.31SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.385SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.384SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.32SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used