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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.115SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.29SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AA.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.178SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.208SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.197SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.491SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EV.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
P.1.8 (Gamma)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.39.3 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.8.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.75.3 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.10.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FD.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KG.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.13SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HA.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.351 (Beta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.36SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HZ.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.30SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.19.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.5.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FP.2.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.2.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JW.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JL.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.571SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.55 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XAMSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.239SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.574SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.72SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.43SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.85SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.66 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.72 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.133 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.5.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.43.7 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.33.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
EN.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.30 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.85 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.6.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.21SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FK.1.3.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used