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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
AY.34 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.10.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.16.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.9.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.16.22SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.76SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.39SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.43SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GY.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.4.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.107SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.120 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.4.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDK.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LL.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.22SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.3.13SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XCUSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.27.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.18.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.3.2.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.4.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.3.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.65.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LF.1.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDVSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KS.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
MK.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.4.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KR.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.49SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
MF.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.29.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.2.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.24.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.18.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LU.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.40SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
MG.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.20SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LB.1.7.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.18.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.16.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LR.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KR.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LQ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used