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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
P.1.17 (Gamma)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.126 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.48 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18758.6South Korea
AY.116.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.52 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.13 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.35 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.122 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GS.4.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.1.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.55.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LQ.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.62SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
MD.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.55SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.5.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.20SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDKSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.54SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.35SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FU.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18758.6South Korea
XBB.1.16SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.3.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.3.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.57SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.2.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LC.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LF.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.39SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HZ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
B.1.1.172SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.110SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.320SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
A.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.91SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KB.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.14SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.32SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.1.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.51.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDD.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.526 (Iota)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.2 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.621 (Mu)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.9.2 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used