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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.286SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.17SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.369SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.69SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.26SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.87SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.39.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.1.34SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.35SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.1.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XAY.2.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CH.1.1.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.36SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BV.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.26SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BE.4.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GM.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.20SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.26SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.129 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XAY.2.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18758.6South Korea
BF.7.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CM.8.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.7.5.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BE.1.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.9.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.4.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.58SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XAY.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.71SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBC.1.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CP.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DN.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CL.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBC.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.26.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DS.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.1.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.27SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DV.6.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-1215.87South Korea
BN.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.11.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.14SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.4.1.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used