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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
AY.5.5 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
P.1.7 (Gamma)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.24 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.119.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.25.2 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.122.6 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.621.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.39.2 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.125 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.103.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.92 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.122.4 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.101 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.1.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
BE.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FS.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.54SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.29SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.29SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
N.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
P.1.15 (Gamma)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.348SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.575SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.26SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
P.1.14 (Gamma)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
P.1.7.1 (Gamma)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
P.1.2 (Gamma)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.112 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
P.1.10 (Gamma)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
A.2.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.102 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.124 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.46.6 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.43.3 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CH.1.1.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.5.2.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.45SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GP.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.4.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBQSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.6.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CR.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BV.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GA.4.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GS.7.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.1.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
BA.1.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
AD.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.201SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
W.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used