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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BM.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XLSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BD.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
AY.87 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BE.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.11.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBF.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BZ.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.10.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.7.24SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.44SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BE.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.7.4.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.5.4 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.323SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.15SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.105 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.4.4 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.4.9 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.398SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.94 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.18SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.18SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.47SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.16SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.41 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.71SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AS.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.142SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.166SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.4.11 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.34.2 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.315SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.204SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.50SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.170SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.232SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.84SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.76SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.301SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.269SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.234SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.165SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.258.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
V.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.149SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used