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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
AY.82 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
A.30SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.35SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.23.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.466.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.213SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.56 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.39.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.91.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.4.14 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.3.16SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.41SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.375SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BL.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.75.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBHSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BL.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.78SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.9.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.64SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.1.23SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
B.1.1.134SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.39.1.3 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.3.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-1215.87South Korea
C.38SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
XBC.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Q.2 (Alpha)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BL.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
M.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.3.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.5.6 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.440SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.25SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.23.2 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.104 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.198SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XAFSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BC.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
P.1.17.1 (Gamma)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.48SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JQ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.10.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BL.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.23SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BL.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BE.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.9.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.6.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used