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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.621.1 (Mu)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.7.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.32SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.1.67SWon-SCTACATGCACCAGCAACTGT20502311423133F-10601.4South Korea
CK.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BE.1.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-10601.4South Korea
XBB.1.16.25SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GA.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.37SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XAY.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.16.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.60SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FH.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CJ.1.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HZ.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-17417.6South Korea
XBB.1.5.31SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.22SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EN.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.2.3.14SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
FL.13SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
DV.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.11.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-10601.4South Korea
GJ.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
HJ.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.101SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.31SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EG.1.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.1.45SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.16.20SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.34.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JD.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.25SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.79SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HP.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FU.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EU.1.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
XBB.1.5.97SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CH.1.1.14SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FE.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.17SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.3.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
XBB.1.5.95SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
ET.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.34SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.19SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.1.56SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used