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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBB.1.21SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EJ.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BM.1.1.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.132 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.160.17SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.4.1.10SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.19SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
KF.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CS.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.83SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BJ.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XDGSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GA.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
DV.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.2.11SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.53SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.4.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EU.1.1.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
CM.2.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.43SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HU.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JB.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.55SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBPSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CH.1.1.22SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.36SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.37SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.2.10SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.21SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BN.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BN.1.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AD.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.26.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
KD.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XCSSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GA.7.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
FL.15.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.40SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CR.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
KB.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GK.11SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CJ.1.3.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XANSWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
BN.1.4.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.123.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.9.2.2 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EW.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBF.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.1.37SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used