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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
P.1.11 (Gamma)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.435SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.445SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.124SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.384SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
XAQSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.3.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.569SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.524SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.47.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBF.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-10601.4South Korea
CF.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CM.11SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
DN.3.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
DJ.1.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBC.1.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CM.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BW.1.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.10.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.160.25SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.74SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BN.2.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.2.6.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.238SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.11SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.1.68SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.7.26SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.2.12SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.39.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EK.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.233SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.24SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.320SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
C.33SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.635SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
C.21SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
C.14SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.19 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EP.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.15.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XCBSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.15.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CM.8.1.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
XSSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.4.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.29SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.38SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used