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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.36.27SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.19SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.336SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.400.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.537SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.548SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.24.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.492SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.540SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.487SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AE.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.201SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.221SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.410SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.411SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.109SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.361SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.38SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
A.12SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.417SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AM.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.75SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.51SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.106SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
D.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.593SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.438.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.290SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.341SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.161SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.69 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.134SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.393SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.381SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
C.32SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AE.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.516SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.526SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.279SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AE.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
N.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.36SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.345SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.53SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.450SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.334SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.589SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.335SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.169SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.43SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used