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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.229SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.342SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.90SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.169SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.53SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.513SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.338SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.284SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.9.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.498SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.184SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.187SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
D.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AE.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.110.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.342SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.214SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.284SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.351.3 (Beta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.318SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
R.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.29 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
ML.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.283SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BE.12SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.96SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.547SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.247SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.4.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.205SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.110SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.434SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.4.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.181SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.6.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.37SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.176SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.3.4 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.391SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.393SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.432SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.388SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
P.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.48SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.112SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.274SWon-SCTACATGCACCAGCAACTGT20502311423133F-10601.4South Korea
B.1.515SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.450SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.130SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used