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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BA.2.13SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.69SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.60SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.9.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.45 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.70 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.26.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.5 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.108 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.32 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.46.3 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.4.6 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.75.2 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
C.37 (Lambda)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.1.33SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CP.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.45SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BN.1.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.5.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.41SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.75.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.1.20SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CR.1.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
DV.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BT.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Q.4 (Alpha)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.442SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
P.1.1 (Gamma)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
A.2.5.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.600SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
P.1.12 (Gamma)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.525 (Eta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.6 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.5.5 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
P.1.7 (Gamma)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.24 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.119.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.25.2 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
AY.122.6 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.621.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.39.2 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.125 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.103.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.92 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.122.4 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.101 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.1.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
BE.1.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FS.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.54SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used