Browse
Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBB.1.16.21SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.568SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
P.1.13 (Gamma)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.372SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.634SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
C.37.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.630SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.360SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.578SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.9SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HK.23.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JE.1.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
XBB.1.5.83SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.32SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HN.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HK.13SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GK.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
FL.24.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GK.1.8.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GE.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
LH.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.16SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
LN.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.1.25.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.1.16.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.1.57.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.1.44.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.2.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XDD.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
KR.1.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HK.22SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FW.1.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.13SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
KH.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
LM.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.1.17SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.15SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.1.1.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.1.63.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.1.27SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.1.12SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.1.51SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.1.1.9SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.19SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
KU.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
KZ.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.1.36SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JQ.2.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
KT.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used