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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
GJ.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HJ.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.101NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.1.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.45NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.20NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.34.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JD.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.25NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.79NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HP.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FU.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EU.1.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.97NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CH.1.1.14NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FE.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.17NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.3.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.95NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
ET.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.34NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.32NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.26.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FK.1.3.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FK.1.2.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FK.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CH.1.1.18NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.5.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HD.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HQ.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.1.12NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.11.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EE.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BN.3.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BE.4.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BY.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.26NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.76NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BN.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CK.1.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.11NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.4.6.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used