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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.212NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.61NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.20.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FY.5.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.13.2.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JY.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-20999.4South Korea
XCRNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.86NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GJ.1.2.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GE.1.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HN.2.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.29NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GE.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.5.1.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GA.4.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.3.2.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.13.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.20.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-20999.4South Korea
HK.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.8.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.19.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GE.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.6.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.30NWon-NGTTGCGACTACGTGATGAGG20552884928830R-22305.6South Korea
XDA.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.58.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.33NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.13.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GK.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-20999.4South Korea
XCMNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HN.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.42.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HN.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-20999.4South Korea
DV.7.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.62NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GW.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.1.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FY.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.5.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FY.3.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.12NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FR.1.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.4.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FR.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HH.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.22.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used