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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
JN.1.8.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.1.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.4.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDD.1.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDNNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LH.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HW.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.55.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.18.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDK.4.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.3.4.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.2.11NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LS.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.1.1 (Omicron)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.2.14NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.4 (Omicron)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
DN.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.3.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.4.1.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BW.1.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.2.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.312NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.13.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.220NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.142NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.523NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FW.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HN.3.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.1.1.17NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BS.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CM.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.75.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CA.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.453NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.637.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.79NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BG.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.3.10NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KN.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.10NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.61NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.2.37NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.2.10NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XASNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.3.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BE.1.4.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CH.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.2.53NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BL.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CM.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used