Browse
Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.636NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.126NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.47NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDQ.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-19760.5South Korea
JD.1.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBC.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FY.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.31.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GK.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.27NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CK.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CM.8.1.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CA.3.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.2.61NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.2.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
ED.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BU.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BN.1.3.11NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CN.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.17NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BG.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.4.1.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.576NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.325NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.22NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.521NWon-NGTTGCGACTACGTGATGAGG20552884928830R-19760.5South Korea
B.1.378NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.206NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.3.14NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CP.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.39NWon-NGTTGCGACTACGTGATGAGG20552884928830R-21359South Korea
BF.40NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BN.1.3.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BM.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.57NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EF.1.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.29NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.1.32NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BW.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LT.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.8.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LV.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.54.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.30.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.1.1.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
MN.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used