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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.368NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.404NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.306NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.328NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
A.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.533NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.525NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.480NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.15NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.24NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.236NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.153NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.302NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.194NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.55NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.51NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.308NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.138NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.28NWon-NGTTGCGACTACGTGATGAGG20552884928830R-19194.1South Korea
B.1.1.77NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.2.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.13.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HV.1.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.2.3.16NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BM.2.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBENWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BE.1.4.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.3.12NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XCGNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.30NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
DT.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
DT.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XCANWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.50NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.54NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GN.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.77 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.53 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.36.10NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.599NWon-NGTTGCGACTACGTGATGAGG20552884928830R-19777.6South Korea
B.1.1.128NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.451NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.313NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.402NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.609NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.344NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.556NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.245NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.403NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used