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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.243.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.98NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.566NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.480NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.579NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
N.10NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
P.1.11 (Gamma)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.435NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.445NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.124NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.384NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XAQNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.3.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.569NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.524NWon-NGTTGCGACTACGTGATGAGG20552884928830R-1923.32South Korea
XAYNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
DJ.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XAENWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.467NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.484NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.476NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
A.19NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
A.18NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.404NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CV.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.4.6.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.18NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.12.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LZ.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.3.1.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KW.1.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KU.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.4.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.2.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LP.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.3.1.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GQ.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JA.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.5.1.10NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.2.7.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.9.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.2.3.22NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JV.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.3.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CH.1.1.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.27NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.10.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.36NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EF.1.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.32NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used