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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.110.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.180NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.155NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.92NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.145NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.120NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.77NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AE.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.504NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AE.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.201NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.221NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.410NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.411NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.109NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.361NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.38NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
A.12NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.417NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.442NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.75NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.51NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.106NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
D.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.593NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.438.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.290NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.341NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.161NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.69 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.134NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.393NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.381NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
C.32NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AE.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.516NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.526NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.279NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AE.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
N.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.345NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.53NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.450NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.334NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.589NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.335NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.169NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.43NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.42NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AE.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used