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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.160.12NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AT.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.42NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.428NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.374NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.63 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.377NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.258.15NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.298NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
C.30.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.76NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.258.11NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.120NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AM.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AA.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.249NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AA.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.505NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.74NWon-NGTTGCGACTACGTGATGAGG20552884928830R-1923.32South Korea
B.1.406NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.115NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.29NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AA.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.178NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.208NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.197NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.491NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EV.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-21359South Korea
P.1.8 (Gamma)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.39.3 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.8.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.12NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.75.3 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.35NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CY.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FR.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBJ.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CP.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GJ.1.2.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CK.1.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.56.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.7.21NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.7.13.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.37NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CK.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CM.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBC.1.3.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.11.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDLNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used