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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.617.2 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.67 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.110 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.39.1 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.1.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.1.1.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.1.1.14NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.1.20NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.43.4 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.57 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.1.17NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.1.1.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.1.1.10NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.1.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.3.3 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.28.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.5.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.7.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.4.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.65NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.39.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDQ.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-19760.5South Korea
JN.1.4.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.7.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDK.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.4.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.26NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.37NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JQ.2.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.23.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
DY.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.2.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LJ.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LE.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
MD.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.1 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.1.1.16NWon-NGTTGCGACTACGTGATGAGG20552884928830R-14678.7South Korea
BA.1.18NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.3.1 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.1.21NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.1.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.1.15.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.1.15.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.36 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.1.1.18NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.7 (Alpha)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
P.1 (Gamma)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.120.1 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.119.2 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used